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I composed this list by counting how many times individual mystery novels appeared on multiple best-of lists. The Murder of Roger Ackroyd appeared on five best-of lists, more than any other novel. The novels without a number listed in the fifth column appeared on a single best-of list.

Christie Agatha The Murder of Roger Ackroyd 1926 5
Doyle Arthur Conan The Hound of the Baskervilles 1902 4
Hammett Dashiell The Maltese Falcon 1930 4
Crispin Edmund The Moving Toyshop 1946 4
Highsmith Patricia The Talented Mr. Ripley 1957 4
Collins Wilkie The Moonstone 1868 3
Bentley E.C. Trent's Last Case 1912 3
Hammett Dashiell Red Harvest 1929 3
Sayers Dorothy Strong Poison 1930 3
Cain James M. The Postman Always Rings Twice 1934 3
Christie Agatha Murder in the Orient Express 1934 3
Carr John Dickson The Three Coffins 1935 3
Innes Michael Hamlet, Revenge! 1937 3
Marsh Ngaio Surfeit of Lampreys or Death of a Peer 1940 3
Fearing Kenneth The Big Clock 1946 3
Gilbert Michael Smallbone Deceased 1950 3
Tey Josephine The Daughter of Time 1951 3
Allingham Margery The Tiger in the Smoke 1952 3
Poe Edgar Allan Tales 1845 2
Doyle Arthur Conan The Adventures of Sherlock Holmes 1892 2
Futrelle Jacques The Thinking Machine 1907 2
Chesterton Gilbert Keith The Man Who Was Thursday 1908 2
Rinehart Mary Roberts The Circular Staircase 1908 2
Chesterton Gilbert Keith The Innocence of Father Brown 1911 2
Chesterton Gilbert Keith The Wisdom of Father Brown 1914 2
Milne A.A. The Red House Mystery 1922 2
Berkeley Anthony The Poisoned Chocolates Case 1929 2
Snow C.P. Death Under Sail 1932 2
Sayers Dorothy Murder Must Advertise 1933 2
Queen Ellery The Chinese Orange Mystery 1934 2
Sayers Dorothy The Nine Tailors 1934 2
Stout Rex The League of Frightened Men 1935 2
Blake Nicholas Thou Shell of Death 1936 2
Christie Agatha The ABC Murders 1936 2
Blake Nicholas The Beast Must Die 1938 2
DuMaurier Daphne Rebecca 1938 2
Ambler Eric A Coffin for Demetrios 1939 2
Chandler Raymond The Big Sleep 1939 2
Woolrich Cornell The Bride Wore Black 1940 2
Chandler Raymond The High Window 1942 2
Queen Ellery Calamity Town 1942 2
Chandler Raymond The Lady in the Lake 1943 2
Brand Christianna Green for Danger 1944 2
Eustis Helen The Horizontal Man 1946 2
Blake Nicholas Minute for Murder 1947 2
Brown Frederick The Fabulous Clipjoint 1947 2
Bardin John Franklin Devil Take the Blue Tail Fly 1948 2
Chrispin Edmund Buried for Pleasure 1949 2
Queen Ellery Cat of Many Tails 1949 2
Thompson Jim The Killer Inside Me 1952 2
Levin Ira A Kiss Before Dying 1953 2
Chandler Raymond The Long Good-bye 1954 2
Millar Margaret Beast in View 1955 2
Ellin Stanley Mystery Stories 1956 2
McDonald Philip The List of Adrian Messenger 1959 2
Le Carre John The Spy Who Came in From the Cold 1963 2
MacDonald Ross The Chill 1964 2
Thompson Jim Pop. 1280 1964 2
Ball John In the Heat of the Night 1965 2
Sjowall & Wahloo Sjowall & Wahloo The Laughing Policeman 1968 2
MacDonald Ross The Underground Man 1971 2
Smith Mark The Death of the Detective 1974 2
Crumley James The Last Good Kiss 1978 2
Rosen Richard Strike Three, You're Dead 1984 2
James P.D. A Taste for Death 1986 2

Wilkie Collins The Woman in White 1860

Anna Katharine Green The Leavenworth Case 1878

Fergus Hume The Mystery of a Hansom Cab 1886
Doyle Arthur Conan A Study in Scarlet 1887
Doyle Arthur Conan The Memoirs of Sherlock Holmes 1894

Mark Twain Pudd'nhead Wilson 1894

Anna Katharine Green The Circular Study 1900

Baroness Orczy The Scarlet Pimpernell 1905
Freeman Austin The Red Thumb Mark 1907

C.K. Chesterton The Innocence of Father Brown 1911

Marie Belloc Lowndes The Lodger 1913

Oliver Onion In Accordance With the Evidence 1915

John Buchan The Thirty-Nine Steps 1915

Christopher Morley The Haunted Bookshop 1919

E. Phillips Oppenheimer The Great Impersonation 1920

Agatha Christie The Mysterious Affair at Styles 1920

Agatha Christie The Mousetrap 1925

John Buchan John McNab 1925

Earl Derr Biggers The Chinese Parrot 1926

G.D.H. Cole & R. Postgate The Murder at Crome House 1927

S.S. Van Dine The Canary Murder Case 1927

P.G. Wodehouse Meet Mr. Mulliner 1927

S.S. Van Dine The Greene Murder Case 1928

Ronald A. Knox The Footsteps at the Lock 1928

Freeman Wills Crofts The Purple Sickle Murders (or The Box Office Murders) 1929

Thomas Kindon Murder in the Moor 1929

Elery Queen The Roman Hat Murder 1929

Kenneth Roberts Arundel 1930

R. Austin Freeman Mr. Pottermack's Oversight 1930

Raoul Whitfield Green Ice 1930

Miles Burton The Secret of High Eldersham 1930
Hammett Dashiell The Glass Key 1931

Francis Iles Malice Aforethought 1931

Maxwell Grant The Living Shadow 1931

Francis Beeding Death Walks in Eastrepps 1931

Maxwell Grant The Shadow Laughs 1931

Eden Phillpotts Found Drowned 1931

Henry K. Webster Who Is the Next? 1931

Dorothy Sayers Five Red Herrings 1931

Earl Derr Biggers Keeper of the Keys 1932

T.H. White Darkness at Pemberly 1932

Ellen Wilkinson The Division Bell Mystery 1932

Dermot Morrah The Mummy Case Mystery (or The Mummy Case) 1933

James Hilton Was it Murder? 1933

Kenneth Roberts Rabble in Arms 1933

J.C. Masterman An Oxford Tragedy 1933

Phoebe Atwood Taylor The Mystery of Cape Cod Tavern 1934

P.G. Wodehouse Thank You, Jeeves 1934

Rex Stout Fer-de-Lance 1934
Chesterton Gilbert Keith The Club of Queer Trades 1935

Ethel Lina White Wax 1935

Ngaio Marsh Enter a Murderer 1935

James Hilton Was It Murder? 1935

Gerald Bullett The Jury 1935
Blake Nicholas The Beast Must Die 1936
Cain James M. Double Indemnity 1936
Marsh Ngaio Overture to Death 1936

Kenneth Roberts Northwest Passage 1936

Ethel Lina White The Lady Vanishes 1936

Graham Greene This Gun for Hire 1936
Carr John Dickson The Burning Court 1937

Margery Allingham Dancers in Mourning 1937
Allingham Margery The Fashion in Shrouds 1938
Carr John Dickson The Crooked Hinge 1938
Dickson Carter The Judas Window 1938

Michael Innes Lament for a Maker 1938

R. Austin Freeman The Stoneware Monkey 1938

Clayton Rawson Death from a Top Hat 1938

P.G. Wodehouse The Code of the Woosters 1938

Georgette Heyer A Blunt Instrument 1938

Rex Stout Too Many Cooks 1938

Paul McGuire A Funeral in Eden (or Burial Service) 1938

C.S. Forester Ship of the Line 1938

Arthur Upfield The Bone Is Pointed 1938
Dickson Carter The Reader Is Warned 1939

Agatha Christie And Then There Were None 1939

Clayton Rawson Footprints on the Ceiling 1939

Eliot Paul The Mysterious Mickey Finn 1939

James Hadley Chase No Orchards for Miss Blandish 1939

Geoffrey Household Rogue Male 1939

Elspeth Huxley The African Poison Murders 1939
Chandler Raymond Farewell, My Lovely 1940
Christie Agatha And Then There Were None 1940
Postgate Raymond Verdict of Twelve 1940

Kenneth Roberts Oliver Wiswell 1940

C.W. Grafton Beyond a Reasonable Doubt 1940
Blake Nicholas The Corpse in the Snowman 1941

James M. Cain Mildred Pierce 1941

Cornrll Woolrich The Black Curtain 1941

Richard & Francis Lockridge A Pinch of Poison 1941

C.S. Forester Payment Deferred 1942

Vera Gaspary Laura 1942

Helen McCloy Cue for Murder 1942

Cornell Woolrich The Black Angel 1942

Michael Innes The Daffodil Affair 1942

Graham Greene The Ministry of Fear 1943

Virginia Perdue Alarum and Excursion 1944

Erle Stanley Gardner The Case of the Crooked Candle 1944

Joel Townley Rogers The Red Right Hand 1945

Gladys Mitchell The Rising of the Moon 1945

Clifford Witting Measure for Murder 1945

Lewis Lange The Birthday Murder 1945

Edmund Crispin Holy Disorders 1945

Marco Page The Shadowy Third 1946

Hilda Lawrence The Pavilion 1946

Roy Huggins The Double Take 1946

Patricia McGerr Pick Your Victim 1946

Dorothy B. Hughes Ride the Pink Horse 1946
Stout Rex Too Many Women 1947
Stout Rex And Be a Villain 1948

Edna Sherry Sudden Fear 1948

Carter Dickson The Skeleton in the Clock 1948

Mickey Spillane I, the Jury 1948

Thomas Kyd Blood on the Bosom Divine 1948

Cornell Woolrich Rendezvous in Black 1948
Highsmith Patricia Strangers on a Train 1949
Stout Rex The Second Confession 1949

Philip Clark The Dark River 1949

M. Heberden Engaged to Murder 1949

Ngaio Marsh A Wreath for Rivera 1949

Cyril Hare When the Wind Blows 1949

Raymond Chandler The Little Sister 1949

Norman Longmate Strip Death Naked 1949

Ross Macdonald The Drowning Pool 1950

Dorothy B. Hughes In a Lonely Place 1950

Mickey Spillane My Gun Is Quick 1950

Josephine Tey To Love and Be Wise 1950

Graham Greene The Third Man 1950

Elizabeth Daly Death and Letters 1950

Patricia Highsmith Strangers on a Train 1950

Matthew Head The Congo Venus 1950

Andrew Garve No Tears for Hilda 1950
Symons Julian The 31st of February 1951

John & Emery Bonett A Banner for Pegasus (or Not in the Script) 1951

Rocc Macdonald The Ivory Green 1952

Stanley Ellin The Key to Nicholas Street 1952

Joanna Cannan The Body in the Beck 1952

Michael Innes One-Man Show 1952

Frederick Brown The Deep End 1952

Frederick Brown Meatball 1953

John D. MacDonald Dead Low Tide 1953

Josephine Tey The Singing Sands 1953

Davis Grubb The Night of the Hunter 1953

Raymond Chandler The Long Goodbye 1953

Hillary Waugh The Missing Man 1954

Jim Thompson A Hell of a Woman 1954

Julian Symons The Narrowing Circle 1954

Rex Stout The Black Mountain 1954

Walter Tyrer Such Friends Are Dangerous 1954

Herbert Brean Wilders Walk Away 1955

William Mole The Hammersmith Maggot (or Small Venom) 1955

Alex H. Atkinson Exit Charlie 1955

Christopher Landon Stone Cold Dead in the Market 1955

Robert Robinson Landscape for Dead Dons 1956

Maurice Proctor The Pub Crawler 1956

Edward Grierson The Second Man 1956
Ellin Stanley The Eighth Circle 1958

Henry Kuttner Murder of a Wife 1958

Nigel Fitzgerald Suffer a Witch 1958

Graham Greene Our Man in Havana 1958

Bruce Hamilton Too Much of Water 1958

Robert Traver Anatomy of a Murder 1958
Blake Nicholas The Widow's Cruise 1959
Thompson Jim The Getaway 1959

Robert Bloch Psycho 1959

Helen Robertson Swan Song (or The Chinese Goose) 1960

Leo Bruce Furious Old Women 1960

Geoffrey Household Watcher in the Shadows 1960

Jean Scholey The Dead Past 1961

Glun Carr Death Finds a Foothold 1961

Arthur W. Upfield The Will of the Tribe 1962

Lionel Davidson The Rose of Tibet 1962

Ross Macdonald The Zebra-Striped Hearse 1962

P.D. James Cover her Face 1962

Dick Francis Dead Cert 1962

Margaret Millar How Like an Angel 1962

Fletcher & Bailey Seven Days in May 1962

Simon Nash Killed by Scandal 1962

Len Deighton The Ipcress File 1962

S.B. Hough The Bronze Perseus (or The Tender Killer) 1962
McBain Ed Ten Plus One 1963
Nash Simon Death Over Deep Water 1963

Thomas Blanchard Dewey A sad Song Singing 1963

Alistair MacLean Ice Station Zebra 1963

Robert Van Gulik The Emperor's Pearl 1963
Kemelman Harry Friday the Rabbi Slept Late 1964

John Garner The Liquidator 1964

David Walker Winter of Madness 1964

Amanda Cross In the Last Analysis 1964

Jane Langton The Minuteman Murder 1964

Len Deighton Funeral in Berlin 1964

Hans Helmut Kirst The Night of the Generals 1964

Mary Stewart This Rough Magic 1964

Rex Stout The Doorbell Rang 1965

L.P. Davies Who Is Lewis Pinder? 1965

Adam Hall The Quiller Memorandum 1965

Patricia Moyes Johnny Under Ground 1965

Carlton Keith The Crayfish Dinner (or The Elusive Epicure) 1966

J.B. Priestley Salt Is Leaving 1966

Emma Lathen Murder Makes the Wheels Go 'Round 1966

Helen MacInnes The Double Image 1966

Stanley Hyland Green Grow the Tresses-O 1967

Ross Thomas The Seersucker Whipsaw 1967

Robert van Gulik Necklace and Calabash 1967

J.J. Marric Gideon's River 1968
MacDonald Ross The Good-bye Look 1969

Simon Troy Swift to Its Close 1969

George MacDonald Fraser Flashman 1969

Sjowall & Wahloo The Fire Engine that Disappeared 1969

Mario Puzo The Godfather 1969

Colin Watson Just What the Doctor Ordered 1969

Alistair MacLean Puppet on a Chain 1969

Frank Swinnerton On the Shady Side 1970

Jack Finney Time and Time Again 1970

P.M. Hubbard High Tide 1970
Candy Edward Words for Murder Perhaps 1971

George V. Higgins The Friends of Eddie Coyle 1971

A.H.Z. Carr Finding Maubee 1971

Alistair MacLean Bear Island 1971

Frederick Forsyth The Day of the Jackal 1971

Tony Hillerman The Fly on the Wall 1971

Frederick Forsyth The Odessa File 1972

David Anthony Blood on a Harvest Moon 1972

Trevanian The Eiger Sanction 1972

Victor Canning The Rainbird Pattern 1972

John Miles The Night Hunters 1973

Trevanian The Loo Sanction 1973

Lawrence Sanders The First Deadly Sin 1973

Julian Symons The Plot Against Roger Ryder 1973

Ross Thomas If You Can't Be Good 1973

K.C. Constantine The Man Who Liked to Look at Himself 1973

Robert Littell The Defection of A.J. Lewinter 1973
Bergman Andrew The Big Kiss-Off of 1944 1974
Simon Roger The Big Fix 1974

Peter Benchley Jaws 1974

Anthony Price Other Paths to Glory 1974

Joseph Wambaugh The Onion Field 1974

Frederick Forsyth The Dogs of War 1974

John D. MacDonald The Dreadful Lemon Sky 1974

John Le Carre Tinker, Tailor, Soldier, Spy 1974
Christie Agatha Curtain 1975

William Gardner A Big Enough Wreath 1975

Tony Kenrick Stealing Lilian 1975

Wilbur Smith The Eye of the Tiger 1975

Jack Higgins The Eagle Has Landed 1975

Thomas Gifford The Cavanaugh Quest 1976

Arthur Morrison Best Martin Hewitt Detective Stories 1976

Ira Levin The Boys from Brazil 1976

Ellis Peters Never Pick Up Hitch Hikers 1976

Wilbur Smith Cry Wolf 1976

Nan & Ivan Lyons Someone Is Killing the Great Chefs of Europe 1976
Hjortsberg William Falling Angel 1977
James P.D. Death of an Expert Witness 1977
McBain Ed Long Time No See 1977
Rendell Ruth Means of Evil 1977

George MacDonald Fraser Flashman's Lady 1977

Ruth Rendell A Judgement in Stone 1977

George Hart The Punch and Judy Murders 1977

Brian Freemantle Charlie M. 1977

Ken Follett The Eye of the Needle 1978

La Rosa & Tannenbaum The Random Factor 1978

Irving & Bukholz The Death Freak 1978

Desmond Bagley Flyaway 1978

Trevanian Shibumi 1979

William Gardner The Mobius Strip 1979

Collins & LaPierre The Fifth Horseman 1980

George MacDonald Fraser Mr. American 1980

Michael Crichton Congo 1980

Peter Fox Mantis 1980
Lyons Arthur Hard Trade 1981

Thomas Harris Red Dragon 1981

Ann Perry Paragon Walk 1981

David Gurr A Woman Called Scylla 1981

Dick Francis Twice Shy 1982

Duff Hart-Davis The Heights of Rimring 1982

W. R. Duncan The Queen's Messenger 1982
Eco Umberto The Name of the Rose 1983
McBain Ed Ice 1983

Joe McGinniss Fatal Vision 1983

Dorothy Dunnett Dolly and the Bird of Paradise 1984

Raymond Paul The Tragedy at Tiverton 1984

Ross Thomas Briarpatch 1984

Duncan Kyle The King's Commissar 1984
Auster Paul The New York Trilogy 1985
Crumley James Dancing Bear 1985
Leonard Elmore Glitz 1985
Rendell Ruth The Killing Doll 1985
Maxwell Thomas Kiss Me Once 1986
Potter Dennis The Singing Detective 1986
Paretsky Sara Bitter Medicine 1987
Vine Barbara A Fatal Inversion 1987
Grafton Sue "C" is for Corpse

Wade Henry Heir Presumptive